PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15577.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 221aa    MW: 24819 Da    PI: 6.5057
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15577.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.7e-113311747
                     HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqky 47
                       lG++ W++Ia++++ gRt++++k++w+++
        PK15577.1  3 SVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 31
                     569***.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.352136IPR017930Myb domain
SuperFamilySSF466892.65E-9243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-15233IPR009057Homeodomain-like
PfamPF002494.9E-9331IPR001005SANT/Myb domain
CDDcd001671.66E-7732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
XHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG IDPVTHTPRL DLLELSSLLN  60
STLYNSHLSY LINNYNNNHN NNNNLLGNMG PPLVNNENLL SLASALLSSS NQQNIVPQNI  120
VQNQNQIYDN NDDHSQYCGQ LPFLSETPFM QSKMEQFPQR TIHDDQSQQN HDLYHISNQG  180
LATGVESSTI TTTVAPMELI DHNGYISARS SSSSTTSLIL X
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281638.16e-40PREDICTED: transcription factor MYB39
TrEMBLA5C8086e-40A5C808_VITVI; Putative uncharacterized protein
TrEMBLF6H2F37e-40F6H2F3_VITVI; Putative uncharacterized protein
STRINGVIT_19s0014g03820.t012e-39(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1689547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.12e-28myb domain protein 74